Hi Christopher,
I would suggest that you pick a topic that you find interesting and would enjoy spending a considerable amount of time researching. Often professors will help a person choose a topic.
What areas of Microwave and RF do you find the most interesting: antennas, amplifiers, filters, resonators, couplers, power dividers, waveguides, etc.
Are there any applications that you find interesting?
Check out this recent "video":http://www.eeweb.com/blog/cody_miller/xray-that-penatrates-concrete-walls I found it interesting.
I spent some time researching near field radiated emission measurements. I was trying to find a procedure or test method to correlate near field measurements to far field measurements. We also created the ability to do 2D scanning of a system or PC board in operation and create a near field emissions map of the device. That was fun.