This is one dangerous experiment, the energy involved is quite high(C*v*v Joules). The potential to have molten copper flying around, or ruptured capacitors, is high, so wear safety glasses. On no account put a short on the system!
Put a discharge system in place to bring the capacitors down to a safe voltage before you start diving in to make any changes.
What load are you discharging the capacitors into, this and the impedance of the connecting wire, and capacitors will determine how quickly you can cycle the system.
I am assuming here that the capacitors are rated for something more than you require of them.
The standard formula i=C(dV/dt) applies to this or any other systems involving capacitors. You can arrange the formula to suit the known values.
Thermal management will improve the lifetime of the capacitors, if this is a short term experiment, it probably won't matter. The large can size will mean that transferring heat from the core is a problem.
Read this document,
http://www.digikey.co.nz/Web%20Export/Supplie...8/PDF/CDE_PredictingLifeTemp.pdf?redirected=1 it probably covers a lot of what you need to know.
cheers,
Richard