The answer can you get this charger to work from 48VDC, the answer is yes. It may actually work from 48VDC as is, although it may have UV lockout which may prevent that.
You will need to take 48VDC, and apply the +/- voltage to the DC side of the bridge diode, then turn on the 48VDC. Good idea though to slowly bring it up first to make sure nothing goes wrong, then apply the full voltage to see if it starts. Even if it does start it may not regulate because it would normally want to work from about 130VDC rectified.
Now say it doesn't work, then the primary side of the transformer/coupled-inductor must be re-wound for the same volt-seconds / duty cycle. This is a transformer explanation while in reality it is a coupled inductor. I won't go into those details because it won't help you modify it any better. The resonant clamp circuit may or may not require mods, this serves to protect the MOSFET max voltage exposure.
Basically al this module does is take AC, rectify it to make DC, then all it is factually is an isolated DC/DC converter. A complete schematic would be very helpful.
Also you'll need a primary side schematic to determine if there is a UV lockout, which would require value changes.
Also I will say the design analysis on the charger was well done. Yes Apple charges lots of money but then Apple has deep pockets and if there is a mishap where someone gets hurt/injured/killed, Apple gets sues 10 ways to Sunday. The knock offs are long gone if they catch wind of litigation.